QMS2 How-To

A step-by-step guide for using the QTL Macro for SAS® Software[1]

Dr. Jeffrey Lessem

Research Associate
University of Colorado
Institute for Behavioral Genetics

    447 CB
    Boulder CO, 80309-0447
    USA
    Jeff.Lessem@Colorado.EDU
  

Dr. Stacey Cherny

Head of Statistical Genetics Applications
University of Oxford
Wellcome Trust Centre for Human Genetics

    Roosevelt Drive
    Oxford, OX3 7BN
    United Kingdom
    cherny@well.ox.ac.uk
  


Table of Contents
1. Introduction
About the Document
License Terms
Reporting Bugs
Obtaining and Extracting QMS2
Requirements for using QMS2
2. I just want to analyze my data!
Data analysis considerations
Putting it all together
3. A step-by-step walk-through
Genehunter 2
pre-sas.sh
ghimport.sas
qms2.sas
4. pre-sas.sh
5. ghimport.sas
The macro itself
A sample SAS Software script with ghimport.sas
6. qms2.sas
The macro itself
A sample SAS Software script with qms2.sas
List of Examples
2-1. What to type
2-2. my_genehunter.in
2-3. myanalyzer.sas
3-1. my_genehunter.in
3-2. Running pre-sas.sh.
3-3. Setting mautosource
3-4. Calling ghimport.sas
3-5. Calling qms2.sas
4-1. Running pre-sas.sh.
5-1. myimporter.sas
6-1. myanalyzer.sas

Notes

[1]

SAS and all other SAS Institute Inc. product or service names are registered trademarks or trademarks of SAS Institute Inc. in the USA and other countries. ® indicates USA registration.